Slurm Exploration Dashboard is designed to give you an idea of how many resources you will need to run certain programs on Oscar.
We would be grateful if you could provide some feedback to us.
Currently only bioinformatics programs are in the database.

Job Template
An example sbatch script for the selected program is below. You can copy it and replace the srun command with appropriate options and filenames.

Template:


          

          

            

            

          

          

            

          

        

      

      

        
This tab displays some rows from the data table used in the plots. A glossary of columns can be found on the Glossary tab.

        

          
          
        

        

      

      

        

          
Glossary of database terms

          

          JobID:
          Slurm-assigned identification number of the job or job step.
          

          number_of_tasks:
          Total number of tasks in a job or step.
          

          cpus_per_task:
          Total number of CPU in a job or step
          

          Program:
          The name of the QC program that generated the metric being reported.
          

          file_sizes:
          The size of the input file in GB
          

          srun_command:
          The command passed to SLURM to run the job.
          

          file_size_bins:
          The file sizes have been grouped into bins so you can compare similar data sets.
          

          max_rss:
           Maximum resident set size of all tasks in job (in GB).
          

          job_time:
          The total time the job took to run (in minutes)
          

        

      

      

        

          This Shiny dashboard is designed to give you an idea of how many resources you will need to run certain programs on 
          Oscar,
           the high performance computing cluster at CCV. All data
             points are from actual runs of the program on SLURM. Our aim is to allow researchers to have a better understanding of resources
             needed on Oscar, as well as provide examples of commands to run such programs.
          

          

          Currently all programs are in bioinformatics. In the future we hope to have program runs from other disciplines as well.
          

          

          
Authors

          The 
          Computational Biology Core
          : Dr. August Guang, Dr. Jordan Lawson, Dr. Ashok Ragavendran, Dr. Joselynn Wallace
          

          

          
Contact

          august_guang@brown.edu